brainvisa-4.6 open 96% 91 issues (88 closed — 3 open) Related issues Defect #17633: Windows: packging issue Actions Defect #17676: check uses of anatomist AObject.boundingbox() after change in API Actions Defect #17956: Windows: check tempfile calls in BrainVISA core and toolboxes Actions Task #4438: Estimation of the amount of work to switch from PyQt to PySide Actions brainvisa-aims - Defect #8256: pyaims: mesh.vertex().assign() should accept numpy arrays as input Actions brainvisa-aims - Defect #15517: incomplete bindings for manipulating int keys dictionaries Actions brainvisa-aims - Defect #15558: bugs allocating pyaims Volumes using arrays Actions brainvisa-aims - Defect #17421: Windows: unable to write a Volume of POINT3DF from python Actions brainvisa-aims - Defect #17559: Windows: undefined symbols in DLLs Actions brainvisa-aims - Defect #17668: saving a 2D texture in GIFTI returns without error but does not save any data array Actions brainvisa-aims - Defect #17958: aims::aimsVersion() is actually soma-io version Actions brainvisa-aims - Defect #18356: bv_maker doc fails to import soma.aims.carto Actions brainvisa-aims - Task #1337: in pyaims rc_ptr, remove the get() method Actions brainvisa-aims - Task #15766: add tests for unallocated volume writing in test_pyaims_io Actions brainvisa-anatomist - Defect #1130: perspective mode is broken Actions brainvisa-anatomist - Defect #1273: When many referentials are present, transformations updates become very very slow Actions brainvisa-anatomist - Defect #2631: MacOS: tooltip display on an Anatomist window lay a black square when it disappear Actions brainvisa-anatomist - Defect #3405: Wrong display of roi toolbox menu on Mac OS 10.6.8 Actions brainvisa-anatomist - Defect #7988: The slice position jumps when the cursor is moved too fast Actions brainvisa-anatomist - Defect #13471: Ubuntu 14.04: when starting a session without graphical acceleration, anatomist is not able to display volumes Actions brainvisa-anatomist - Defect #14733: Label Volume Editor: segmentation fault Actions brainvisa-anatomist - Defect #17415: pyanatomist threaded implementation is not thread-safe for subclasses Actions brainvisa-anatomist - Defect #17548: the new 3D referential window is not destroyed when closed Actions brainvisa-anatomist - Defect #17648: Shift + left button does not fill drawn ROI anymore Actions brainvisa-anatomist - Defect #17718: anatomist display of vertex, polygon and texture is broken Actions brainvisa-anatomist - Defect #18094: windows boundingboxes are broken when objects of different referentials are displayed Actions brainvisa-anatomist - Defect #18154: Anatomist::lastPosition() doesn't take referential into account Actions brainvisa-anatomist - Defect #18318: voxel size for dims > 3 are not correctly handled Actions brainvisa-anatomist - Defect #18972: Windows 7: About message is not displayed in the about windows Actions brainvisa-anatomist - Feature #1334: Improve ergonomy of manual registration Actions brainvisa-anatomist - Feature #1442: Improve ROI drawing Actions brainvisa-anatomist - Task #5617: Add to anatomist training or manual elements of old html documentation Actions brainvisa-anatomist - Task #18233: Openslide: multi resolution images should defaultly be opened in lowest resolution to avoid memory issues Actions brainvisa-axon - Defect #3921: MultipleDataInspector processes cannot be saved Actions brainvisa-axon - Defect #6175: "Nonetype" object has not attribute 'acquire' Actions brainvisa-axon - Defect #6905: axon crashes when deleting complex pipelines Actions brainvisa-axon - Defect #10100: During some pipeline execution, a not reproducible error occured Actions brainvisa-axon - Defect #12078: Pipeline iteration Actions brainvisa-axon - Defect #13861: Error raised during documentation update Actions brainvisa-axon - Defect #14238: ListOf(Point3D) does not work as expected Actions brainvisa-axon - Defect #17293: viewer failures cause axon to abort Actions brainvisa-axon - Defect #17423: some parameters links are broken in an interaction between morphologist and longitudinal_pipelines Actions brainvisa-axon - Defect #17452: Matrix type parameters cannot be read from a .procdoc Actions brainvisa-axon - Defect #17456: The new viewers system makes processes GUI really too slow Actions brainvisa-axon - Defect #17509: Parallel iteration over importers seems to deadlock Actions brainvisa-axon - Defect #17512: Matplotlib qt backend issue at exit Actions brainvisa-axon - Defect #18649: editors icons disapear when a data is selected Actions brainvisa-axon - Feature #3922: Sqlite files should not be shared anymore Actions brainvisa-axon - Feature #9245: Longitudinal data organization framework Actions brainvisa-axon - Feature #9384: Display some "declared attributes" in the database filter Actions brainvisa-axon - Feature #11241: Integration of the SPM flexible factorial design in Brainvisa Actions brainvisa-axon - Feature #11964: Adapt Axon database engine to longitudinal studies Actions brainvisa-axon - Feature #11974: Create a new Axon database implementation Actions brainvisa-axon - Feature #13894: add help in axon-runprocess Actions brainvisa-axon - Task #11965: Create a new database engine Actions brainvisa-data_storage_client - Defect #8796: Windows : Data storage client fails to untar many files unsing multiple threads Actions brainvisa-data_storage_client - Feature #9269: MIRCen : Add year and month levels in MRI organisation display Actions brainvisa-development - Defect #2652: bv_maker can fail if configuration is done through a symlink Actions brainvisa-development - Defect #14673: Missing shared library dependencies in the installer packages under Linux Actions brainvisa-development - Defect #16877: Windows 7: add pandas install in thirdparty cross compilation script Actions brainvisa-development - Defect #17519: QT_API is unconditionally set to pyqt Actions brainvisa-development - Defect #17584: Windows: Qt jpeg plugin fails Actions brainvisa-development - Defect #17763: boost detection with multiple config prevents from setting its path Actions brainvisa-development - Defect #18442: python3 byte-compiling happens at every build Actions brainvisa-development - Defect #18683: python packaging may be broken when mixing up several installs of the same module Actions brainvisa-development - Task #8656: Windows : Add build on 64 bit computer Actions brainvisa-development - Task #8910: Windows : Add automatic installation component for qtinstaller Actions brainvisa-development - Task #14527: Ensure compatibility with systems that use Python 3 by default Actions brainvisa-nuclear_imaging - Defect #8984: Automatic filling of fields in CAPP study for Quality Check Pipeline Actions brainvisa-soma - Defect #7203: manage optional dependency of cartobase on brainvisa-share and soma-base Actions brainvisa-soma - Defect #9157: soma-workflow commandline arguments and quotes Actions brainvisa-soma - Defect #10978: Soma-workflow always fails to start workflow after the 'No handlers could be found for logger "engine.WorkflowEngine"' error occured Actions brainvisa-soma - Defect #15295: GenericObject has no API to get the int keys of an int dictionary while iterating Actions brainvisa-soma - Defect #15765: Nifti writer: regression in writing unallocated volume to file Actions brainvisa-soma - Defect #17298: dicom writer crashes on CentOS 5.11 Actions brainvisa-soma - Defect #17436: dicom writer crashes on CentOS for RGB values Actions brainvisa-soma - Defect #17437: DICOM reader re-read floating point image as unsigned int image Actions brainvisa-soma - Defect #17581: Error in notebook tutorial Actions brainvisa-soma - Defect #17635: Windows: soma openslide is not able to read images Actions brainvisa-soma - Defect #17682: OptionParser silently consumes misspelt options [with patch] Actions brainvisa-soma - Defect #17740: NaNs are replaced by zeros when reading from a NIfTI file Actions brainvisa-soma - Defect #17997: libjpegxr seems to not be packaged with openslide library Actions brainvisa-soma - Defect #18609: traits cloning does not copy correctly ControllerTrait Actions brainvisa-morphologist - Defect #1649: siLearn.py crashes randomly at various places Actions brainvisa-morphologist - Defect #2011: take care of lesion_mask when extracting sulci Actions brainvisa-morphologist - Defect #2883: module version incompatibility in a model pickle Actions brainvisa-morphologist - Defect #14644: discrepency between .nii and .trm normalization info Actions brainvisa-morphologist - Defect #17397: Normalization processes should use th ones in the SPM toolbox Actions brainvisa-morphologist - Defect #17881: brainvolumes overwrites the voronoi, using an outdated process Actions brainvisa-morphologist - Feature #2119: Improve management of sulci models data Actions brainvisa-morphologist - Task #1938: Rename SPAM models internal files to shorter names Actions
brainvisa-4.7 open 22% 53 issues (9 closed — 44 open) Related issues Task #14703: Registration toolbox / ANTs processes Actions brainvisa-aims - Defect #9301: AimsResample does not use a low-pass filter when downsampling Actions brainvisa-aims - Defect #10926: VolumeFormatReader / ImageReader cannot modify the image header Actions brainvisa-aims - Defect #11914: Point2d type is AimsVector<short,2>. Actions brainvisa-aims - Defect #12497: alignment problem in AimsFFDApply in nearest neighbor mode Actions brainvisa-aims - Defect #12953: AimsFileConvert: fails to convert BucketMap to Volume Actions brainvisa-aims - Defect #14727: AimsMorphoMath in binary mode Actions brainvisa-aims - Feature #13468: Integrate AimsRegisterAffineEstimate command from Y. Balbastre code Actions brainvisa-aims - Feature #13714: AimsConnectComp: not able to detect more than 32767 connected components on a S16 image Actions brainvisa-aims - Feature #13739: Conversion of 3D volumes in 2D formats series consistency may be improved Actions brainvisa-aims - Task #12480: get rid of the aims GIS IO Actions brainvisa-aims - Task #12981: Track down undefined behaviour and memory leaks with -fsanitize Actions brainvisa-aims - Task #13838: Add tests for partial accesses and memory mapping reading/writing Actions brainvisa-aims - Request #689: try to make pyaims bindings to numpy arrays for RGB/RGBA images Actions brainvisa-anatomist - Defect #8113: Fusion3D does not work correctly with RGB volumes Actions brainvisa-anatomist - Defect #13588: Volumes with extremely large values cannot be displayed properly Actions brainvisa-anatomist - Defect #14593: Compilation of SIP modules using PyQt4 fails when find_package(VTK) is used and VTK is using Qt 5 Actions brainvisa-anatomist - Feature #7772: Fusion2D working in image intensity space Actions brainvisa-anatomist - Feature #9827: Add an option to choose the resampling mode of a specific volume Actions brainvisa-anatomist - Task #12069: finish or disable the shader-based volume rendering module Actions brainvisa-anatomist - Request #1646: avoid volume rendering objects to slow down the GUI when changing palette Actions brainvisa-axon - Defect #11166: WriteDiskItem.findValue() cannot handle fso_attributes.csv Actions brainvisa-axon - Defect #16156: neuroConfig parses sys.argv unconditionally Actions brainvisa-axon - Defect #17398: some parameters values may be silently invalidated (while still unchanged in the GUI) Actions brainvisa-data_storage_client - Feature #9635: Data storage client GUI is not resizable Actions brainvisa-development - Defect #12733: bv_maker_pure_python.pth is never cleared Actions brainvisa-development - Defect #17336: [casa-distro] workaround DNS problem with docker Actions brainvisa-development - Defect #17821: bv_maker: Add possibility to generate both offline and online installer without rebuilding the package repository Actions brainvisa-development - Defect #17998: Add bv_maker option to do svn cleanup on each configured source project Actions brainvisa-development - Feature #13613: Add a command "clean" to bv_maker Actions brainvisa-development - Feature #14091: split brainvisa-share packaging into 2 (at least) components Actions brainvisa-development - Feature #14092: move all doc packages to the data repository Actions brainvisa-development - Feature #18042: bv_maker: add a property in configuration file to run actions for tagged directories Actions brainvisa-development - Feature #18043: bv_maker: add --prefix option to install_pack command Actions brainvisa-development - Feature #18045: bv_maker: add command publish_pack Actions brainvisa-development - Task #8806: Windows : add support for long pathes (i.e. : > 255 characters) Actions brainvisa-development - Task #14378: Create nearest possible tree at build and packaging time (excepted thirdparty dependencies) Actions brainvisa-development - Task #16356: Window: cross compile and install dot in /i2bm/brainvisa/Windows-7-i686 Actions brainvisa-development - Task #17520: setup a config file with additional install-specific variables for bv_env Actions brainvisa-development - Task #18147: install nipype in windows casa-dev images Actions brainvisa-development - Task #18367: bv_maker: Offline packages does not work because shared data repository is missing Actions brainvisa-soma - Defect #9717: DRMAA leaves files in ~/.drmaa Actions brainvisa-soma - Defect #13612: Ensure coherence of .minf metadata and file-level metadata Actions brainvisa-soma - Defect #15714: volume: segfault in VolumeRef copy constructor Actions brainvisa-soma - Defect #17890: soma-workflow: issue when using files path containing special characters Actions brainvisa-soma - Task #12971: Get rid of unsafe C-style casts Actions brainvisa-soma - Task #14555: soma workflow bottlenecks and unstabilities Actions brainvisa-soma - Request #14790: Soma-io: Add ROIs parameters to header Actions brainvisa-morphologist - Defect #9790: Iteration with Morphologist 2013 Actions brainvisa-morphologist - Defect #13159: Histo analysis view (in morphologist-ui?) sometimes disapear Actions brainvisa-morphologist - Feature #12790: Use well-composed topology in VipHomotopic Actions brainvisa-morphologist - Task #14709: make a deterministic mode for sulci recognition Actions brainvisa-morphologist - Request #12791: VipGeometry uses a 5×5×5 kernel where a 3×3×3 kernel would suffice Actions
brainvisa-morphologist - brainvisa-5.0 open 100% 2 issues (2 closed — 0 open) Related issues brainvisa-morphologist - Defect #22211: VipHistoAnalysis crashes with "free(): double free detected in tcache 2" Actions brainvisa-morphologist - Defect #22425: The brainvisa-share database is not created during Morphologist tests Actions